Emergence of Genetic Coding: An Information-Theoretic Model
نویسندگان
چکیده
This paper introduces a simple model for evolutionary dynamics approaching the “coding threshold”, where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. The model evolves a dynamical system, where a conglomerate of primitive cells is coupled with its potential encoding, subjected to specific environmental noise and inaccurate internal processing. The separation between the conglomerate and the encoding is shown to become beneficial in terms of preserving the information within the noisy environment. This selection pressure is captured information-theoretically, as an increase in mutual information shared by the conglomerate across time. The emergence of structure and useful separation inside the coupled system is accompanied by self-organization of internal processing, i.e. an increase in complexity within the evolving system.
منابع مشابه
Origins of Scaling in Genetic Code
The principle of least effort in communications has been shown, by Ferrer i Cancho and Solé, to explain emergence of power laws (e.g., Zipf’s law) in human languages. This paper applies the principle and the information-theoretic model of Ferrer i Cancho and Solé to genetic coding. The application of the principle is achieved via equating the ambiguity of signals used by “speakers” with codon u...
متن کاملModeling gene regulatory networks: Classical models, optimal perturbation for identification of network
Deep understanding of molecular biology has allowed emergence of new technologies like DNA decryption. On the other hand, advancements of molecular biology have made manipulation of genetic systems simpler than ever; this promises extraordinary progress in biological, medical and biotechnological applications. This is not an unrealistic goal since genes which are regulated by gene regulatory ...
متن کاملHow could prebiotic molecules make the code and how all this is related to proteins?.Reply to comments on “A colorful origin to the genetic code” by H. Takagi, K. Kaneko and R. Wallace
I am grateful to the commentators for bringing up two fundamental questions that are in fact related. Takagi and Kaneko look into a concrete molecular mechanism that could lead to the emergence of the genetic code [1], while Wallace takes the rate-distortion paradigm to the realm of proteins and asks about possible implications of my information-theoretic view [2]. Let us start from the first-p...
متن کاملStigmergic gene transfer and emergence of universal coding.
We consider a simple information-theoretic model for evolutionary dynamics approaching the "coding threshold," where the capacity to symbolically represent nucleic acid sequences emerges in response to a change in environmental conditions. We study the conditions when a coupling between the dynamics of a "proto-cell" and its proto-symbolic representation becomes beneficial in terms of preservin...
متن کاملSimulation Models of Prebiotic Evolution of Genetic Coding
Common to all life on Earth are the mechanisms of genetic encoding, in which specific trinucleotide sequences in DNA and RNA map to specific amino acids in synthesized proteins. The proteins which catalyse the coding are themselves products of that synthesis, posing the question of how the system bootstrapped itself and how it maintains stability. Mechanistic models based on chemical associatio...
متن کامل